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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11445789_11446207_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11445789 - 11446207
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTCAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATTACCT
Flanking Amino Acid:
LLQEELLYYKSEEIEEETRT
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
74.9
38.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80
0.68
1
79.1
33.3
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
55
0.23
2.1
79.78
41.5

Associated Gene:

Gene:
RILPL1
Ensembl Gene ID:
ENSAPLG00000025541
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020474
11432518 - 11450508
17991