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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11458488_11458751_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11458488 - 11458751
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACG|GCGCGGCTC
5'SS Class:
major
3'SS Sequence:
GCACGGCCGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATGCAG
U12 Branch Point Sequence:
GCATGCAGCACG
Flanking Amino Acid:
TEEEEEDEEEE
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.31
1.3
61
40.7
Major BPS
42.5
-0.4
1.6
52.7
43.2
Major PPT
50.1
0
1.1
42.7
38.4
Minor 5ss
19
-3.6
4.1
32.7
42.4
Minor BPS
35.9
-1.2
2.3
38.76
43.8

Associated Gene:

Gene:
RILPL2
Ensembl Gene ID:
ENSAPLG00000015655
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029364
11458485 - 11462279
3795