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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1145919_1150041_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1145919 - 1150041
Intron Length:
4123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTTA
5'SS Class:
major
3'SS Sequence:
TTATACAAAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTATTCTGAATG
Flanking Amino Acid:
AQELLQSPKQEAAISCWIQF
Intron Amino Acid Position:
706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
68.7
38.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
57.9
0.18
1
53.4
40.1
Minor 5ss
39.3
-1.2
3.5
55.9
48.2
Minor BPS
65.6
0.35
1.5
68.83
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012171
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022168
1144737 - 1395385
250649
ENSAPLT00000034307
1144737 - 1430941
286205
ENSAPLT00000012672
1144737 - 1397561
252825
ENSAPLT00000028392
1144737 - 1351737
207001
ENSAPLT00000048397
1144737 - 1434770
290034
ENSAPLT00000027628
1144737 - 1367322
222586
ENSAPLT00000040969
1144737 - 1367322
222586
ENSAPLT00000024447
1144737 - 1372582
227846
ENSAPLT00000037047
1144737 - 1430941
286205