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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11460000_11462090_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11460000 - 11462090
Intron Length:
2091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
AACCACAAAAAA
Flanking Amino Acid:
VVQEELQCYKSGIISQTKDQ
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
82.1
30.4
Major BPS
54
0.1
1
59.7
32.6
Major PPT
78.3
0.64
0.9
72.7
37.5
Minor 5ss
44.8
-0.6
2.7
59.5
45.1
Minor BPS
38.4
-0.8
1.9
44.15
36.9

Associated Gene:

Gene:
RILPL2
Ensembl Gene ID:
ENSAPLG00000015655
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016310
11454715 - 11462205
7491