About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11467044_11468147_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11467044 - 11468147
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGACAT
U12 Branch Point Sequence:
CAATCCTGCACT
Flanking Amino Acid:
YYFQYLSKTYCVDATKETNR
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
74.9
36.2
Major BPS
58.8
0.22
1.2
66.8
39.9
Major PPT
87
0.83
0.7
84.6
30.3
Minor 5ss
48.6
-0.1
2.8
64.8
41.1
Minor BPS
53.4
0.19
2
71.12
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023009
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017213
11466833 - 11474452
7620