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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11468390_11469763_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11468390 - 11469763
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTGCTT
5'SS Class:
major
3'SS Sequence:
GGCATATTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TTGCTAGTAAAT
Flanking Amino Acid:
SSRKSKSELESCKYFVISQL
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
66.2
44.9
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
69.8
0.45
1
61.8
43.5
Minor 5ss
35.4
-1.7
3.8
55.9
48.3
Minor BPS
44.8
-0.3
2.2
67.49
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023009
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017213
11466833 - 11474452
7620