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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11469849_11474423_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11469849 - 11474423
Intron Length:
4575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCCGGCG
5'SS Class:
major
3'SS Sequence:
TCTTATTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTC
Flanking Amino Acid:
GRGAEAPPGRTQGRTPNRK
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.2
48.5
42.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.4
0.64
0.7
77.4
30.9
Minor 5ss
28.6
-2.5
3.6
38.6
46.6
Minor BPS
72.6
0.69
1.5
81.59
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023009
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017213
11466833 - 11474452
7620