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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11485000_11485592_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11485000 - 11485592
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAAAACA
5'SS Class:
major
3'SS Sequence:
CTTCCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
CTAGTGATAATT
Flanking Amino Acid:
NPAPTPAVQQSVPLSALELG
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.2
68.8
35.5
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
82.8
0.74
0.7
77
25
Minor 5ss
29.5
-2.4
2.7
33.6
41.1
Minor BPS
42.9
-0.4
2.2
60.51
43.8

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769