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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11485698_11486330_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11485698 - 11486330
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GCTGTCTGAAAA
Flanking Amino Acid:
VSTPALLNVRQPPSTTTFVL
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
78.1
36.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.9
0.56
1
72.9
37.4
Minor 5ss
35.7
-1.6
3
42.9
43.6
Minor BPS
49
-0
1.7
57.74
41.5

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769