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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11486641_11488764_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11486641 - 11488764
Intron Length:
2124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
ATTCCTGTAAAA
Flanking Amino Acid:
NIAQPVATAATDLSNGAVKK
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
84.1
26.4
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
34.9
-1.7
3.4
49.4
41.3
Minor BPS
50.8
0.02
2.1
68.5
37.6

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769