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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11491343_11491952_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11491343 - 11491952
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTACAA
U12 Branch Point Sequence:
TTTTCTCCTACA
Flanking Amino Acid:
QLEAITYAAQQHETFLPNGD
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
49.8
-0
1.1
58.8
38.1
Major PPT
90
0.9
0.6
84.8
23.1
Minor 5ss
49.3
-0
2.5
63.6
48.1
Minor BPS
49.1
-0
2.1
72.55
39

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769