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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11492087_11492220_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11492087 - 11492220
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTATATCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTAACTTAAAT
Flanking Amino Acid:
NYLLGRKRAVWFSVSNDLKY
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.78
0.8
82.3
34.3
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
64.1
0.52
1.7
80.62
40

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769