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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11492312_11493231_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11492312 - 11493231
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGAAA
5'SS Class:
major
3'SS Sequence:
ATCTCTACGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GATTTCTTATCT
Flanking Amino Acid:
KNILVHSLNKFKYGKISSKH
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
72.7
33.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
67.2
0.39
1
63.1
37.6
Minor 5ss
32.2
-2
3
38.5
46.8
Minor BPS
68.9
0.67
1.6
81.75
39.5

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769