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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11493394_11493964_F

Intron Information:

Intron Rank:
9
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
11493394 - 11493964
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AATTATGGTTCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTCCTTAATT
Flanking Amino Acid:
HWCGEDFDGVIVFDECHKAK
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
57.1
42.4
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
66.4
0.37
1.1
62.5
47.3
Minor 5ss
98.8
1.64
0.5
96
12.5
Minor BPS
95.9
1.52
0.5
104
16.3

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769