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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11494101_11494175_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11494101 - 11494175
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTACTGGCACT
Flanking Amino Acid:
KARVVYASATGASEPRNMAY
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
74.2
0.6
1
67
39.4
Major PPT
76.9
0.61
0.8
69.7
36.7
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
44.5
-0.3
2.5
73.21
43.8

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769