Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11497373_11497496_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11497373 - 11497496

Intron Length:

124

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

ATTTGTCCTTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

CTTGTGTTAATT

Flanking Amino Acid:

LAREEIKNGKCVVIGLQSTG

Intron Amino Acid Position:

625

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

77.8

33.2

Major BPS

84.4

0.85

34.5

Major PPT

77.8

0.62

0.8

75.1

35.4

Minor 5ss

41.3

-1

2.8

49.5

41.2

Minor BPS

53.4

0.19

2.2

74.4

43.5

Associated Gene:

Gene:

SBNO1

Ensembl Gene ID:

ENSAPLG00000015674

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016432

11484868 - 11505636

20769