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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11497595_11498194_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11497595 - 11498194
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TTTTCCTTAAAC
Flanking Amino Acid:
GELNDFVSTAKGVFQSLIEK
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.5
27.4
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
76.8
0.6
0.9
73.9
34.5
Minor 5ss
41.3
-1
3.1
56.6
42
Minor BPS
87.4
1.15
1.1
92.09
26.1

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769