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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11499131_11499428_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11499131 - 11499428
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
TATTTAATCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATC
Flanking Amino Acid:
RDESSEDDEDDPWLIRKEHK
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
60.8
45.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.9
0.49
0.9
64
41.4
Minor 5ss
30.6
-2.2
3.3
39.3
46
Minor BPS
75.6
0.78
1.3
83.1
29.9

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769