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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11499600_11499696_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11499600 - 11499696
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTAAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCTCTTAAAT
Flanking Amino Acid:
GTTTSSTNTSANSNTNSSFV
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
78.7
0.65
0.9
74.9
38.5
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
77.3
0.93
1.3
90.72
32

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769