Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11501035_11502245_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11501035 - 11502245

Intron Length:

1211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGCTCTT

5'SS Class:

major

3'SS Sequence:

TTTTTAATAAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATA

Flanking Amino Acid:

EKQRFMDGDKNIAIISEAAS

Intron Amino Acid Position:

932

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.2

72.7

44.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

67.9

0.4

1.1

38.4

Minor 5ss

44.3

-0.6

3.3

67.2

43.9

Minor BPS

82.2

1.01

0.9

86.33

25.3

Associated Gene:

Gene:

SBNO1

Ensembl Gene ID:

ENSAPLG00000015674

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016432

11484868 - 11505636

20769