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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11502382_11502785_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11502382 - 11502785
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTAACTATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTGTTTAACT
Flanking Amino Acid:
WSADRAIQQFGRTHRSNQVT
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
76.5
32.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.6
0.58
1
66.8
43.8
Minor 5ss
35.5
-1.6
2.8
42
39.2
Minor BPS
72
0.77
1.7
87.23
39

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769