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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11503075_11503514_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11503075 - 11503514
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACAGTT
5'SS Class:
major
3'SS Sequence:
TTTTCTTATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATGC
Flanking Amino Acid:
DLSRFNFDNKYGRNALEIVM
Intron Amino Acid Position:
1039

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
75
35.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88.6
0.87
0.8
85.2
28.2
Minor 5ss
36.5
-1.5
3.6
55.7
48.5
Minor BPS
63.4
0.4
1.9
77.51
38.8

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769