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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11504634_11504711_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11504634 - 11504711
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAGAT
U12 Branch Point Sequence:
TTTCCTTTTAAG
Flanking Amino Acid:
KNGRYDMGILDLGSGDEKVR
Intron Amino Acid Position:
1146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
50.8
0.02
1.1
47.1
36.1
Major PPT
78.8
0.65
1
83
25.9
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
55
0.01
1.8
66.22
41.2

Associated Gene:

Gene:
SBNO1
Ensembl Gene ID:
ENSAPLG00000015674
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016432
11484868 - 11505636
20769