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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1151570_1152715_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1151570 - 1152715
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GGTGTCCTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTCTGTTAATT
Flanking Amino Acid:
GWRVPIISNKRPARDSDDEE
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
65
0.34
1
55.8
44.6
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
63.4
0.5
2
84.73
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012171
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027628
1144737 - 1367322
222586
ENSAPLT00000040969
1144737 - 1367322
222586
ENSAPLT00000024447
1144737 - 1372582
227846
ENSAPLT00000037047
1144737 - 1430941
286205
ENSAPLT00000022168
1144737 - 1395385
250649
ENSAPLT00000034307
1144737 - 1430941
286205
ENSAPLT00000012672
1144737 - 1397561
252825
ENSAPLT00000028392
1144737 - 1351737
207001
ENSAPLT00000048397
1144737 - 1434770
290034