Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1152922_1183666_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1152922 - 1183666

Intron Length:

30745

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCCCA

5'SS Class:

major

3'SS Sequence:

CTTTTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTAAT

U12 Branch Point Sequence:

CACTCATTAATT

Flanking Amino Acid:

CRSSDEDVIKVSDRCDYVFV

Intron Amino Acid Position:

482

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

1.1

62.5

43.9

Major BPS

79.4

0.73

0.9

79.6

29.1

Major PPT

96.3

1.04

0.5

95.7

14.9

Minor 5ss

36.8

-1.5

3.3

48.2

47.5

Minor BPS

63.7

0.51

1.6

74.1

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012171

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012672

1144737 - 1397561

252825

ENSAPLT00000028392

1144737 - 1351737

207001

ENSAPLT00000048397

1144737 - 1434770

290034

ENSAPLT00000027628

1144737 - 1367322

222586

ENSAPLT00000040969

1144737 - 1367322

222586

ENSAPLT00000024447

1144737 - 1372582

227846

ENSAPLT00000037047

1144737 - 1430941

286205

ENSAPLT00000022168

1144737 - 1395385

250649

ENSAPLT00000034307

1144737 - 1430941

286205