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Intron Name: Anas_platyrhynchos_platyrhynchos_16_11533971_11536747_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11533971 - 11536747

Intron Length:

2777

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

AATTCTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

GATCTTTTAAAA

Flanking Amino Acid:

SKSAMERLKRGIIHARGLVR

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.8

88.6

27.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

83.4

0.75

0.8

77.5

35.7

Minor 5ss

42.7

-0.8

3.4

64.1

47.4

Minor BPS

58.4

0.26

1.4

63.91

35.6

Associated Gene:

Gene:

CDK2AP1

Ensembl Gene ID:

ENSAPLG00000024296

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025023

11522443 - 11536815

14373