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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11536413_11538910_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11536413 - 11538910
Intron Length:
2498

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATA|GCAAATAAA
5'SS Class:
major
3'SS Sequence:
TCCAACCTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TCTTTCCAACCT
Flanking Amino Acid:
KQFKEMLQLDIILLQWGEKN
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.4
0.25
1.3
62.9
37
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
64.2
0.32
1
61.7
39.6
Minor 5ss
25.9
-2.8
3.7
34.2
36.6
Minor BPS
46.8
-0.1
2.2
71.51
45.7

Associated Gene:

Gene:
C12orf65
Ensembl Gene ID:
ENSAPLG00000016073
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016763
11536357 - 11542883
6527