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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11539116_11539740_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11539116 - 11539740
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAGAA
U12 Branch Point Sequence:
TGCAACAGAAGT
Flanking Amino Acid:
KHVPSGIVVKCHQTRSVEQN
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
80.6
33.4
Major BPS
49.3
-0
0.9
44.7
28.3
Major PPT
79.4
0.66
0.9
77.2
37.1
Minor 5ss
35.9
-1.6
3.2
48.7
47.1
Minor BPS
40.4
-0.6
2
56.74
44.7

Associated Gene:

Gene:
C12orf65
Ensembl Gene ID:
ENSAPLG00000016073
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016763
11536357 - 11542883
6527