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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_115451_116994_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115451 - 116994
Intron Length:
1544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CATTCTCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCATTCTCAAAT
Flanking Amino Acid:
YRKAYFSKFPGVWAHGDYCK
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
83.1
28.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
63.5
0.3
1
59.5
35.6
Minor 5ss
42.1
-0.9
2.5
53.5
43.9
Minor BPS
59.3
0.37
1.7
74.14
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018136
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025783
113425 - 122208
8784