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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11554451_11554834_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11554451 - 11554834
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACTCT
5'SS Class:
major
3'SS Sequence:
TCACCTCCTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TGTTCAGCAAGA
Flanking Amino Acid:
VFSTKVSPDQSSSADEMKLS
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
65.7
41
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
65.4
0.35
1
68.3
32.1
Minor 5ss
44.4
-0.6
3.3
65.3
46.1
Minor BPS
42.4
-0.5
2.5
61.67
44

Associated Gene:

Gene:
MPHOSPH9
Ensembl Gene ID:
ENSAPLG00000016075
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016784
11543803 - 11568684
24882