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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11554961_11555762_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11554961 - 11555762
Intron Length:
802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
ACTTACTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTTTTTAGTA
Flanking Amino Acid:
PSSQSSHPPEILTLDPTLHM
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
70.8
0.47
0.9
62.3
38.8
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
68.3
0.57
1.4
78.34
32.6

Associated Gene:

Gene:
MPHOSPH9
Ensembl Gene ID:
ENSAPLG00000016075
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016784
11543803 - 11568684
24882