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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11558426_11559169_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11558426 - 11559169
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTTCTTCTACA
Flanking Amino Acid:
NKNNMLEKQVTDWRERFYAV
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
92.7
0.96
0.6
88.1
21.9
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
63.5
0.42
1.9
79.64
36.2

Associated Gene:

Gene:
MPHOSPH9
Ensembl Gene ID:
ENSAPLG00000016075
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016784
11543803 - 11568684
24882