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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11564907_11565220_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11564907 - 11565220
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAG
U12 Branch Point Sequence:
TTGTCTCTCACA
Flanking Amino Acid:
PPSNRKSNTPTRREIMLAPV
Intron Amino Acid Position:
928

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
63.7
0.34
1.5
63.4
44
Major PPT
81.5
0.71
0.8
76.3
32.3
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
53.2
0.09
2.1
71.56
40.9

Associated Gene:

Gene:
MPHOSPH9
Ensembl Gene ID:
ENSAPLG00000016075
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016784
11543803 - 11568684
24882