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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11565342_11566136_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11565342 - 11566136
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTAGTGAATA
Flanking Amino Acid:
LLSKNENTVTRFDVLLDDLE
Intron Amino Acid Position:
968

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
86.3
29
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.3
0.64
0.8
73.5
31.1
Minor 5ss
45.5
-0.5
2.9
66.2
44.9
Minor BPS
47.3
-0.2
2.3
64.96
41.7

Associated Gene:

Gene:
MPHOSPH9
Ensembl Gene ID:
ENSAPLG00000016075
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016784
11543803 - 11568684
24882