About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11567336_11567874_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11567336 - 11567874
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCTGTTATT
Flanking Amino Acid:
FDELTQEKQQIEAALSRIPC
Intron Amino Acid Position:
1074

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77.4
37.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
77.8
0.62
0.9
78.3
34.9
Minor 5ss
24.9
-2.9
4.1
38.7
46.6
Minor BPS
55.4
0.25
2.3
83.31
38.3

Associated Gene:

Gene:
MPHOSPH9
Ensembl Gene ID:
ENSAPLG00000016075
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016784
11543803 - 11568684
24882