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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11567944_11568582_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11567944 - 11568582
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAAAAA
5'SS Class:
major
3'SS Sequence:
CTTTAACTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTTTCTTTAACT
Flanking Amino Acid:
RMTLQARLNQEALEDRLERI
Intron Amino Acid Position:
1097

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1
66.5
34.2
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
66.1
0.36
1
59.3
41.7
Minor 5ss
25.6
-2.8
3
30.7
42.7
Minor BPS
94.7
1.48
0.6
103.9
16.9

Associated Gene:

Gene:
MPHOSPH9
Ensembl Gene ID:
ENSAPLG00000016075
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016784
11543803 - 11568684
24882