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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11654981_11656647_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11654981 - 11656647
Intron Length:
1667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
AAATGTCTAACT
Flanking Amino Acid:
SPAEKRQTILDPIDIVKDPI
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
83.6
0.76
0.8
77.4
30.8
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
49.1
0.01
2
69.29
41.3

Associated Gene:

Gene:
PITPNM2
Ensembl Gene ID:
ENSAPLG00000016158
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047447
11637974 - 11702043
64070
ENSAPLT00000016882
11637974 - 11702043
64070