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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11671048_11671931_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11671048 - 11671931
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTTTT
5'SS Class:
major
3'SS Sequence:
TCTGTGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTAAACC
Flanking Amino Acid:
IETPECDDVQGDLYHETSAE
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
80.7
34.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.8
0.65
0.9
69.2
41.8
Minor 5ss
45.8
-0.4
2.8
59.1
45.4
Minor BPS
59.2
0.27
1.6
67.53
38.7

Associated Gene:

Gene:
PITPNM2
Ensembl Gene ID:
ENSAPLG00000016158
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016882
11637974 - 11702043
64070