About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11672003_11674689_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11672003 - 11674689
Intron Length:
2687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CATCCCCACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCATCCCCACCT
Flanking Amino Acid:
SSVERLSIIEDESVQPLMQP
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
60.1
0.23
0.9
51.4
32.6
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
47.5
-0.1
2.1
69.94
46.3

Associated Gene:

Gene:
PITPNM2
Ensembl Gene ID:
ENSAPLG00000016158
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016882
11637974 - 11702043
64070