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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11676731_11682761_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11676731 - 11682761
Intron Length:
6031

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCG|GCGAGGGAG
5'SS Class:
major
3'SS Sequence:
CTCTTCTGGAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCTTCAC
U12 Branch Point Sequence:
ATCTGCTTCACG
Flanking Amino Acid:
QTVSESQNSSRKFYLLPPFN
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.3
59.4
43.2
Major BPS
59.7
0.24
1.3
65.3
41.6
Major PPT
49.3
-0
1.8
60
40.6
Minor 5ss
13.3
-4.2
3.6
20
37.8
Minor BPS
49.7
-0.1
2.3
61.17
46.7

Associated Gene:

Gene:
PITPNM2
Ensembl Gene ID:
ENSAPLG00000016158
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047447
11637974 - 11702043
64070