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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11676756_11677040_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11676756 - 11677040
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
TTTCAAATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTATTTCAAAT
Flanking Amino Acid:
SRRGSVVSVQDTDLLSPGIT
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
72.7
0.51
0.9
63.3
41.6
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
51.5
0.12
1.6
70.83
39.8

Associated Gene:

Gene:
PITPNM2
Ensembl Gene ID:
ENSAPLG00000016158
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016882
11637974 - 11702043
64070