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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11682311_11682670_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11682311 - 11682670
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TCCATCTCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTTCTCCATCT
Flanking Amino Acid:
LRKTVIPALDIFQLRPACQQ
Intron Amino Acid Position:
730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
69.4
41.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
79.8
0.67
0.8
76.8
31.7
Minor 5ss
39.1
-1.2
3
57.4
40.4
Minor BPS
51.2
0.12
2.1
80.99
40.7

Associated Gene:

Gene:
PITPNM2
Ensembl Gene ID:
ENSAPLG00000016158
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016882
11637974 - 11702043
64070