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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11692207_11694805_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11692207 - 11694805
Intron Length:
2599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CTTTTCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TGCACATGAACC
Flanking Amino Acid:
CCVGGEPTGQLAAKWWGTKR
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.3
58.8
40.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
84.9
0.78
0.7
77.7
31.1
Minor 5ss
25.5
-2.8
3.4
30.9
36.3
Minor BPS
50.3
-0
1.8
62.57
42

Associated Gene:

Gene:
PITPNM2
Ensembl Gene ID:
ENSAPLG00000016158
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035941
11692152 - 11702043
9892