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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11697635_11698365_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11697635 - 11698365
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
TTGACTTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTCTTTTTGACT
Flanking Amino Acid:
LRKRTHVKLRNVAANHRIND
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
54.8
44.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
70
0.45
1
65.8
40.8
Minor 5ss
22.7
-3.1
3.2
20
37.8
Minor BPS
75.1
0.87
1.1
86
34.4

Associated Gene:

Gene:
PITPNM2
Ensembl Gene ID:
ENSAPLG00000016158
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047447
11637974 - 11702043
64070
ENSAPLT00000035941
11692152 - 11702043
9892
ENSAPLT00000016882
11637974 - 11702043
64070