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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11698483_11698637_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11698483 - 11698637
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTCT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGACCCAGACT
Flanking Amino Acid:
LDMVTLTGEKVDIHIMTQPP
Intron Amino Acid Position:
970

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.3
38.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
70.5
0.46
1
60.8
44.7
Minor 5ss
38.3
-1.3
3.5
56.7
47.5
Minor BPS
48.6
-0
2.1
72.8
44.1

Associated Gene:

Gene:
PITPNM2
Ensembl Gene ID:
ENSAPLG00000016158
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047447
11637974 - 11702043
64070
ENSAPLT00000035941
11692152 - 11702043
9892
ENSAPLT00000016882
11637974 - 11702043
64070