About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11698787_11699536_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11698787 - 11699536
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGTAC
5'SS Class:
major
3'SS Sequence:
GTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATGCCTATAAAT
Flanking Amino Acid:
IGVYPVKMVVRGDHTYADSY
Intron Amino Acid Position:
1019

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
68
33
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
31.6
-2.1
3.2
40.7
45.8
Minor BPS
51.7
0.13
1.7
70.35
40.1

Associated Gene:

Gene:
PITPNM2
Ensembl Gene ID:
ENSAPLG00000016158
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016882
11637974 - 11702043
64070
ENSAPLT00000047447
11637974 - 11702043
64070
ENSAPLT00000035941
11692152 - 11702043
9892