About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11707514_11708419_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11707514 - 11708419
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCC
5'SS Class:
major
3'SS Sequence:
CCTTGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
GCAGTCACAACT
Flanking Amino Acid:
RVVDPETGRTRLIKGDGEVL
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
36.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
81.6
0.71
0.8
72.6
37.6
Minor 5ss
29.4
-2.4
3.6
41.9
45.1
Minor BPS
44.8
-0.3
1.9
58.42
44.2

Associated Gene:

Gene:
ARL6IP4
Ensembl Gene ID:
ENSAPLG00000023108
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019683
11707159 - 11709302
2144