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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11708538_11708962_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11708538 - 11708962
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTTC
5'SS Class:
major
3'SS Sequence:
GGACACCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
ACAGCTCTGACT
Flanking Amino Acid:
QKESLVDSGPVLTDEQKSRI
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
73.9
38
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
63.1
0.3
1
51
43.4
Minor 5ss
46.8
-0.3
3.2
67.4
44
Minor BPS
47.9
-0
1.7
62.36
42

Associated Gene:

Gene:
ARL6IP4
Ensembl Gene ID:
ENSAPLG00000023108
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019683
11707159 - 11709302
2144