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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11714548_11715407_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11714548 - 11715407
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGAGGTG
5'SS Class:
weak_major
3'SS Sequence:
TTCCTAGATCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TATTCCTAGATC
Flanking Amino Acid:
EWPQVVPGEAEVQRRKQLI
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58
0.19
1.3
53.2
43.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
49.5
-0
1.7
54.7
44.1
Minor 5ss
27.1
-2.6
3.7
37.6
47.3
Minor BPS
65.2
0.46
1.7
74.36
36.8

Associated Gene:

Gene:
OGFOD2
Ensembl Gene ID:
ENSAPLG00000001967
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001964
11710950 - 11715434
4485