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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11724301_11724640_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11724301 - 11724640
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCGCA
5'SS Class:
major
3'SS Sequence:
TATCTGCAATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CGTTTCTTATCT
Flanking Amino Acid:
VLVMSLLAIGSSFAAGIRGG
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.9
37.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
61.6
0.26
1
60.6
40.2
Minor 5ss
36.7
-1.5
3.3
48.4
47.2
Minor BPS
67
0.61
1.6
80.05
42

Associated Gene:

Gene:
ABCB9
Ensembl Gene ID:
ENSAPLG00000002402
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002409
11723264 - 11735459
12196